miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|74548019|gb|DT751237.1|DT751237 CAATGGCTTCAATGACTACTGCTTTCACTTCTCATCTTTCTTCCAAAATCAAAACCCCTTTCTTAGATAACCAATCATCT
TTCCATGTCACTCCATCTCGCATCCAACTCACTCGTTCATCTTCCCCAAACACTCACATCACCATGTCTTCATCATCATC
ATCATCATCTTCATCTTATGATCTATCTTCCTTCAAATTTGAACCAATTAAGGAATCCATTGTATCACGTGAGATGACTC
GCAGATACATGATGGATATGATTACATATGCTGACACTGATGTTGTTGTTGTTGGAGCAGGTTCAGCAGGTCTTTCTTGT
GCTTATGAAATGAGCAAAAACCCTAACATCAACATCGCTATTATCGAACAATCTGTCAGTCCTGGTGGTGGTGCTTGGTT
AGGTGGTCAGCTTTTTTCTGCCATGGTTGTTCGCAAACCTGCTCACATCTTCCTTGATGAACTCGGTGTTGAATACGATG
AACAAGACACCTATGTTGTTATCAAGCACGCTGCCTTGTTTACATCCACAATCATGTCTAAGCTTTTGGCTAAACCAAAT
GTGAAACTTTTTAATGCTGTTGCTGCTGAGGATTTGATCGTGAAAGAAGGTAAAGTTGCTGGGGTTGTCACAAATTGGGC
TTTGGTTTCTATGAATCATGATACACAATCATGTATGGATCCAAATGTAATGGAAGCTAAGATTGTTGTCAGTTCTTGTG
GCCATGATGGTCCTTTTGGTGCTACTGGTGTGAAGAGGCTGAAGAGCATTGGAATGATTGATTCTGTTCCTGGTATGAAA
GCTCTTGATATGAATACTGCTGAAGATGCTATT




Most similar to sp|O23787|THI4_CITSI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O23787|THI4_CITSI Thiazole biosynthetic enzyme, chloroplastic
           OS=Citrus sinensis GN=THI1 PE=2 SV=1
          Length = 356

 Score =  396 bits (1017), Expect = e-109
 Identities = 211/279 (75%), Positives = 223/279 (79%), Gaps = 2/279 (0%)
 Frame = +3

Query: 3   MASM-TTAFTSHLSSKIKTPFLDNQSSFHVTPSRIQLTRXXXXXXXXXXXXXXXXXXXXX 179
           MA+M +TAF   +SS     F    SSFH  P    L R                     
Sbjct: 1   MAAMASTAFAPSVSSTTNKLF---DSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPP 57

Query: 180 XXXX-FKFEPIKESIVSREMTRRYMMDMITYADTDXXXXGAGSAGLSCAYEMSKNPNINI 356
                FKF+PIKESIVSREMTRRYM DMITYADTD    GAGSAGLSCAYE+SKNPNI I
Sbjct: 58  YDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQI 117

Query: 357 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGVEYDEQDTYVVIKHAALFTSTIM 536
           AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELG++YDEQD YVVIKHAALFTSTIM
Sbjct: 118 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIM 177

Query: 537 SKLLAKPNVKLFNAVAAEDLIVKEGKVAGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSS 716
           SKLLA+PNVKLFNAVAAEDLIVK G+V GVVTNWALVSMNHDTQSCMDPNVMEAK+VVSS
Sbjct: 178 SKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237

Query: 717 CGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAI 833
           CGHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAI
Sbjct: 238 CGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAI 276